PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220212.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 222aa    MW: 25427.2 Da    PI: 10.3356
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220212.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.62e-17129218198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k +++s+v+   +l lp +f++++  k  ++  ++l de+g +++  +    ++++  l++GW++F+ a++L +gD +vF+l++ ++f  +v 
  XP_008220212.1 129 FVKPMLQSHVTGGFWLGLPIHFCNKNLPK--RDESVILVDEDGDEYQTVY--LANKRG--LSGGWRGFAIAHELVDGDALVFQLIRPKTF--KVY 215
                     89*********************999433..4557***************..555555..9************************97888..888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_008220212.1 216 IIR 218
                     877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.9E-24123219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.1E-20124218IPR015300DNA-binding pseudobarrel domain
CDDcd100173.24E-26127218No hitNo description
PfamPF023622.5E-16129218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.492129220IPR003340B3 DNA binding domain
SMARTSM010192.9E-25129220IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MVAAKLSYEE SRRQRMEENK KRMEALNLPQ LAQVLKAPSF PKPSPMKRAK PQTVEKQMVV  60
VRRSSRVANL PTPVYKEIAV DPLRMPRRHS NSKHRDFSNR VYASDEARAE ATERAEELES  120
GLGSDHRTFV KPMLQSHVTG GFWLGLPIHF CNKNLPKRDE SVILVDEDGD EYQTVYLANK  180
RGLSGGWRGF AIAHELVDGD ALVFQLIRPK TFKVYIIRVE RT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220212.11e-165PREDICTED: B3 domain-containing protein At3g19184-like
SwissprotQ69V361e-79Y6944_ORYSJ; B3 domain-containing protein Os06g0194400
TrEMBLM5XAI51e-160M5XAI5_PRUPE; Uncharacterized protein
STRINGGLYMA04G04030.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33363168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.13e-69B3 family protein